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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_15099_15717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15099 - 15717

Intron Length:

619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

GACTTTTCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGAAA

U12 Branch Point Sequence:

CTGTGATGACTT

Flanking Amino Acid:

ARECQAARQKQEIPQREKDH

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

85.9

23.9

Major BPS

65.4

0.38

1.4

75.9

36.3

Major PPT

78.3

0.64

0.9

69.5

41.4

Minor 5ss

29.7

-2.3

39.4

46.1

Minor BPS

40.3

-0.6

2.2

57.27

45.8

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019842

5824 - 17638

11815

ENSAPLT00000009529

5824 - 18276

12453