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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_15099_16318_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15099 - 16318

Intron Length:

1220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TACCTCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

ACTTTCTTACCT

Flanking Amino Acid:

ARECQAARQKEAKGEDEETP

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

85.9

23.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

69.8

0.44

65.5

35.7

Minor 5ss

29.7

-2.3

39.4

46.1

Minor BPS

68.7

0.67

1.6

81.49

40.5

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025900

5824 - 18276

12453