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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_15829_15903_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15829 - 15903

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTGAGG

5'SS Class:

major

3'SS Sequence:

CTGTGATTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

CTGTGATTCACA

Flanking Amino Acid:

QDRPVSQGEQVDMHKEEGCS

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.2

0.34

1.1

53.4

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

71.7

0.49

64.7

40.5

Minor 5ss

25.2

-2.8

3.1

31.2

42.5

Minor BPS

-0.4

2.4

59.8

46.1

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019842

5824 - 17638

11815