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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_16623_17402_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16623 - 17402
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
LPEASSQPCVGEMDNVYEVE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.1
0.72
0.8
76.9
31.8
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
HCLS1
Ensembl Gene ID:
ENSAPLG00000009127
Chromosome:
PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025900
5824 - 18276
12453
ENSAPLT00000019842
5824 - 17638
11815
ENSAPLT00000009529
5824 - 18276
12453