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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_17475_17863_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17475 - 17863

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCAATTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTTTTCTGATCA

Flanking Amino Acid:

CAVALYDYQGDGDDEISFDP

Intron Amino Acid Position:

475

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

79.2

0.66

0.9

73.2

36.8

Minor 5ss

34.9

-1.7

3.5

48.2

47.9

Minor BPS

59.5

0.3

1.7

72.83

38.8

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025900

5824 - 18276

12453

ENSAPLT00000009529

5824 - 18276

12453