Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_22018_24977_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22018 - 24977

Intron Length:

2960

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGGGCATG

5'SS Class:

major

3'SS Sequence:

CATGGCAGGAGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCAAAC

U12 Branch Point Sequence:

CAGACCAAACCA

Flanking Amino Acid:

MTPTWNQTRVTEFML

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.1

59.7

46.7

Major BPS

48.4

-0.1

52.9

28.9

Major PPT

41.2

-0.5

1.7

39.8

Minor 5ss

35.7

-1.6

3.2

39.4

46.3

Minor BPS

39.6

-0.7

45.83

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001752

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001746

18788 - 24992

6205