About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_31720_32188_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31720 - 32188
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
CTCTCCTCTACT
Flanking Amino Acid:
YMQGGIDTCQGDSGGPLVCK
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
79.2
0.66
0.8
73.6
29.8
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
58.4
0.35
2
76.38
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030034
Chromosome:
PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046295
29879 - 32533
2655