Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_44712_45159_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44712 - 45159

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TTCTCTCTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

TTCTCTCTCACA

Flanking Amino Acid:

TTLVFFTSDNGPSTMRMARG

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

63.1

43.4

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

84.5

0.78

0.7

79.6

25.9

Minor 5ss

26.2

-2.7

2.9

22.9

37.3

Minor BPS

53.2

0.09

2.1

71.45

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020610

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021389

42359 - 46837

4479