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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_5908_7399_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5908 - 7399

Intron Length:

1492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GTTCGCTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

TTGGAGCTGACG

Flanking Amino Acid:

DDWDTDPDFVNDISEKEQRW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

79.8

0.67

0.9

37.3

Minor 5ss

-2.2

3.2

41.8

Minor BPS

38.4

-1

2.4

47.97

45.5

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019842

5824 - 17638

11815

ENSAPLT00000009529

5824 - 18276

12453

ENSAPLT00000025900

5824 - 18276

12453