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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_7474_8526_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7474 - 8526

Intron Length:

1053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGCGCG

5'SS Class:

major

3'SS Sequence:

ACTGTCTTGCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGACAC

U12 Branch Point Sequence:

CTTGCCTTGACA

Flanking Amino Acid:

IAGSGRAEHIDIHQLRSKVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

54.4

43.4

Major BPS

57.7

0.19

1.2

66.7

Major PPT

69.2

0.43

1.1

61.8

43.9

Minor 5ss

37.9

-1.4

3.3

44.5

44.1

Minor BPS

73.9

0.74

1.4

78.22

38.8

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019842

5824 - 17638

11815

ENSAPLT00000009529

5824 - 18276

12453

ENSAPLT00000025900

5824 - 18276

12453