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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_9521_10203_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9521 - 10203

Intron Length:

683

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGCTGA

5'SS Class:

major

3'SS Sequence:

CTTCTTGTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGACAT

U12 Branch Point Sequence:

GATGACTGACAT

Flanking Amino Acid:

FGIQRDRIDKSALGFEYKGE

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

63.7

Major BPS

55.3

0.13

1.3

64.4

41.8

Major PPT

84.1

0.77

0.8

76.2

37.8

Minor 5ss

43.9

-0.7

2.8

55.7

48.5

Minor BPS

-0.5

57.51

44.2

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009529

5824 - 18276

12453

ENSAPLT00000025900

5824 - 18276

12453

ENSAPLT00000019842

5824 - 17638

11815