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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001852.1_5632_5796_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5632 - 5796
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
TCGCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGCTCACTGATT
Flanking Amino Acid:
TGKLHIEFVKGYYDNPKICA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
71.2
0.53
1
61
37.5
Major PPT
80.8
0.69
0.8
72.9
37.4
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
48.8
-0
1.9
69.92
41

Associated Gene:

Gene:
MLEC
Ensembl Gene ID:
ENSAPLG00000017885
Chromosome:
PEDO01001852.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043385
1650 - 9506
7857