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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001879.1_3694_4356_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3694 - 4356
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGGGTT
5'SS Class:
major
3'SS Sequence:
CAGCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAG
U12 Branch Point Sequence:
GCAACCCCAGCC
Flanking Amino Acid:
ECPWGLGISGLPSGSRHGGW
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
63.9
42.4
Major BPS
40.9
-0.5
1.5
46.1
38.7
Major PPT
61.5
0.26
0.9
50.7
33.7
Minor 5ss
27.9
-2.5
3.9
37
47.6
Minor BPS
40.5
-0.7
2
46.43
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024737
Chromosome:
PEDO01001879.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026155
2813 - 4428
1616