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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001885.1_437_874_R

Intron Information:

Intron Rank:
143828
Intron Class:
major
Intron Phase:
Intron Coordinates:
437 - 874
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTAGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GTTTCCTTAGAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
64.7
0.33
1.7
73
37.5
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
63.8
0.3
1.8
69.97
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024692
Chromosome:
PEDO01001885.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026993
186 - 1128
943