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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001919.1_1932_2647_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1932 - 2647
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTCACCC
Flanking Amino Acid:
TGYEAGEYEMLGEGVGAKET
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.8
77.7
30.7
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
68.6
0.56
1.8
82.89
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029386
Chromosome:
PEDO01001919.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033077
1402 - 4712
3311