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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001919.1_4347_4451_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4347 - 4451
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGTT
Flanking Amino Acid:
LLTLRELHEQATQFGQVLVH
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
76.7
0.6
0.8
68.1
32
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
43.7
-0.4
2
57.18
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029386
Chromosome:
PEDO01001919.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033077
1402 - 4712
3311