Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001919.1_4544_4629_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4544 - 4629

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GACCCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TCCCCACTGACC

Flanking Amino Acid:

LKDNTVLLAEVQKTMKENLA

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.9

83.1

32.5

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

66.9

0.38

0.9

58.4

32.6

Minor 5ss

-2.4

3.9

42.9

44.7

Minor BPS

46.2

-0.3

1.9

57.45

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029386

Chromosome:

PEDO01001919.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033077

1402 - 4712

3311