Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001921.1_158_1106_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158 - 1106

Intron Length:

949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGGGGA

5'SS Class:

major

3'SS Sequence:

CCCGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CCCCCCTGACCC

Flanking Amino Acid:

RNKTEDLEATSEHFKTTSQK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.1

51.6

41.4

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.4

0.8

29.2

Minor 5ss

22.6

-3.2

3.4

28.2

43.9

Minor BPS

46.9

-0.2

1.8

52.11

45.1

Associated Gene:

Gene:

VAMP8

Ensembl Gene ID:

ENSAPLG00000017747

Chromosome:

PEDO01001921.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032957

14 - 1741

1728