Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001924.1_1928_2277_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1928 - 2277

Intron Length:

350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

GTTCCCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTTAC

U12 Branch Point Sequence:

CCCCCGTTACCT

Flanking Amino Acid:

LVFMHVDEPGDTGYGTIYTS

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

48.6

-0

1.2

40.7

39.7

Major PPT

74.7

0.56

0.8

65.8

35.9

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

45.2

-0.2

2.3

60.38

Associated Gene:

Gene:

SORT1

Ensembl Gene ID:

ENSAPLG00000021432

Chromosome:

PEDO01001924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021449

21 - 3965

3945

ENSAPLT00000019877

21 - 3965

3945