Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001924.1_2857_2969_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2857 - 2969

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGCGGC

5'SS Class:

major

3'SS Sequence:

CGTCTCTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

GCGCTCTCATCC

Flanking Amino Acid:

QIHKAVCLAKWGADNTIFFT

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

59.3

40.2

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

77.1

0.61

0.8

68.6

37.2

Minor 5ss

31.4

-2.1

3.3

37.8

42.4

Minor BPS

44.5

-0.4

1.7

48.27

41.5

Associated Gene:

Gene:

SORT1

Ensembl Gene ID:

ENSAPLG00000021432

Chromosome:

PEDO01001924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021449

21 - 3965

3945

ENSAPLT00000019877

21 - 3965

3945