Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001924.1_3282_3406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3282 - 3406

Intron Length:

125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGGA

5'SS Class:

strong_major

3'SS Sequence:

TGGTGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

TGGGGCTGAGCC

Flanking Amino Acid:

MAIGPDNSGKVILTGDVSGG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

68.5

38.7

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

65.3

0.35

41.4

Minor 5ss

30.3

-2.3

3.3

46.8

Minor BPS

42.5

-0.5

2.1

51.8

45.1

Associated Gene:

Gene:

SORT1

Ensembl Gene ID:

ENSAPLG00000021432

Chromosome:

PEDO01001924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021449

21 - 3965

3945

ENSAPLT00000019877

21 - 3965

3945