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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_18097_18567_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18097 - 18567
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGCA
5'SS Class:
major
3'SS Sequence:
TCTTCCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
LHKALDLFSQDTLEMCSKEI
Intron Amino Acid Position:
3616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
57.1
42.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.5
0.69
0.8
74.5
29
Minor 5ss
41.1
-1
3.4
57
47.2
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
DNAH17
Ensembl Gene ID:
ENSAPLG00000009676
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022840
13554 - 44626
31073