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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_18097_18878_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18097 - 18878
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTCCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
AEQGHWVILQDTLEMCSKEI
Intron Amino Acid Position:
3540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
63.1
43.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.5
0.69
0.8
74.5
29
Minor 5ss
25.2
-2.8
3.2
31
43.1
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
DNAH17
Ensembl Gene ID:
ENSAPLG00000009676
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010186
13554 - 44626
31073