Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_20655_20792_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20655 - 20792

Intron Length:

138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCATA

5'SS Class:

strong_major

3'SS Sequence:

GGCTCTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

AGGTGCTGAGCC

Flanking Amino Acid:

INPIYQFSLKAFNVVFEKAI

Intron Amino Acid Position:

3285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

83.2

30.8

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

69.9

0.45

0.9

66.4

35.8

Minor 5ss

37.5

-1.4

48.1

47.6

Minor BPS

45.1

-0.3

54.63

Associated Gene:

Gene:

DNAH17

Ensembl Gene ID:

ENSAPLG00000009676

Chromosome:

PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022840

13554 - 44626

31073

ENSAPLT00000010186

13554 - 44626

31073