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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_25193_25374_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25193 - 25374
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTGCC
5'SS Class:
major
3'SS Sequence:
CTCCCCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGGCAT
U12 Branch Point Sequence:
CCTCCCCCATCC
Flanking Amino Acid:
LTKLQSTASQVDDLKATLAI
Intron Amino Acid Position:
2663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
60.4
39.1
Major BPS
52.1
0.05
1.5
63.4
44.3
Major PPT
71
0.47
0.9
61.9
33.8
Minor 5ss
33
-1.9
3.3
44.7
43.3
Minor BPS
42.8
-0.5
2
52.79
44.4

Associated Gene:

Gene:
DNAH17
Ensembl Gene ID:
ENSAPLG00000009676
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022840
13554 - 44626
31073
ENSAPLT00000010186
13554 - 44626
31073