Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_29866_30549_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29866 - 30549

Intron Length:

684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTCCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGACCAA

U12 Branch Point Sequence:

CTCTGTGGGACC

Flanking Amino Acid:

FRLDPEVPLQASMVHTTETI

Intron Amino Acid Position:

2034

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

71.7

38.4

Major BPS

39.5

-0.6

1.3

38.5

41.2

Major PPT

86.6

0.82

0.7

80.5

31.5

Minor 5ss

35.6

-1.6

2.8

Minor BPS

38.7

-0.9

2.3

49.2

42.1

Associated Gene:

Gene:

DNAH17

Ensembl Gene ID:

ENSAPLG00000009676

Chromosome:

PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022840

13554 - 44626

31073

ENSAPLT00000010186

13554 - 44626

31073