About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_3022_4031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3022 - 4031
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TGTTCTGTAATG
Flanking Amino Acid:
LGTGLLEQELVDCLEETLEK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
76.2
0.59
0.9
72.3
32.3
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
58
0.11
2.1
67.55
40.8

Associated Gene:

Gene:
PGS1
Ensembl Gene ID:
ENSAPLG00000011921
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012441
1207 - 13858
12652