About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_36000_36361_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
36000 - 36361

Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGGGGAGC

5'SS Class:
major

3'SS Sequence:
TGATTTATTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GATTTAT

U12 Branch Point Sequence:
ATTGCCGCATTT

Flanking Amino Acid:
EQWVFDYPAQVALTCTQIWW

Intron Amino Acid Position:
1309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.3
0.6
1
63.9
42.4

Major BPS
70.9
0.52
1.2
63.7
43.9

Major PPT
79.9
0.67
0.9
74.2
40

Minor 5ss
25.8
-2.8
3.2
33.4
42.1

Minor BPS
43
-0.4
2.4
66.16
45

Associated Gene:

Gene:
DNAH17

Ensembl Gene ID:

Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13554 - 44626
31073

13554 - 44626
31073