Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_36488_37031_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36488 - 37031

Intron Length:

544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCGAG

5'SS Class:

major

3'SS Sequence:

CTGCTCGCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCAGAG

U12 Branch Point Sequence:

TCGCTCAGAGTT

Flanking Amino Acid:

LDQECDLSGQVEVWLNRVLA

Intron Amino Acid Position:

1267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.3

63.2

43.4

Major BPS

45.2

-0.3

1.5

44.1

39.6

Major PPT

63.2

0.3

55.1

40.1

Minor 5ss

31.1

-2.2

3.2

37.8

47.1

Minor BPS

41.3

-0.5

1.8

54.7

41.3

Associated Gene:

Gene:

DNAH17

Ensembl Gene ID:

ENSAPLG00000009676

Chromosome:

PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022840

13554 - 44626

31073

ENSAPLT00000010186

13554 - 44626

31073