About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_37547_37726_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37547 - 37726
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTAACTGTATT
Flanking Amino Acid:
LYNKLEALQKRLAICEKALA
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67.5
0.39
1
66.6
40.6
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
48.8
-0
2
74.88
41.3

Associated Gene:

Gene:
DNAH17
Ensembl Gene ID:
ENSAPLG00000009676
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022840
13554 - 44626
31073
ENSAPLT00000010186
13554 - 44626
31073