Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_4132_4770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4132 - 4770

Intron Length:

639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

CTGTATCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTGAT

U12 Branch Point Sequence:

GTGTGTGTAACT

Flanking Amino Acid:

ILLDYTRGSRGRKNSRTMLI

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

81.8

38.5

Major BPS

63.5

0.34

1.4

57.1

49.4

Major PPT

74.2

0.54

0.9

65.4

40.8

Minor 5ss

39.8

-1.1

3.2

51.2

45.5

Minor BPS

48.5

-0

2.4

71.92

45.4

Associated Gene:

Gene:

PGS1

Ensembl Gene ID:

ENSAPLG00000011921

Chromosome:

PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012441

1207 - 13858

12652