Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_4961_5328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4961 - 5328

Intron Length:

368

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAG

U12 Branch Point Sequence:

TGTTCTGGAACT

Flanking Amino Acid:

YLFDDNVILSGANLSDLYFT

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.4

40.3

Major BPS

54.4

0.11

1.4

63.4

35.6

Major PPT

83.7

0.76

0.7

77.7

31.1

Minor 5ss

-2.2

2.9

34.5

Minor BPS

57.2

0.3

2.1

81.55

Associated Gene:

Gene:

PGS1

Ensembl Gene ID:

ENSAPLG00000011921

Chromosome:

PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012441

1207 - 13858

12652