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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001946.1_6283_6387_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6283 - 6387
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
GCTACCTTCACC
Flanking Amino Acid:
EYRILLASPEERVQLQEYSR
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
69
36.1
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
68.8
0.42
0.9
62.8
32
Minor 5ss
26.9
-2.6
3.1
34.8
41.6
Minor BPS
60.4
0.31
1.8
67.82
43.5

Associated Gene:

Gene:
PGS1
Ensembl Gene ID:
ENSAPLG00000011921
Chromosome:
PEDO01001946.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012441
1207 - 13858
12652