Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001969.1_2104_2188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2104 - 2188

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCCT

5'SS Class:

strong_major

3'SS Sequence:

ATGACCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

CACCCCATGACC

Flanking Amino Acid:

NTPEPEEGAEGRSSAPRTKK

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.4

40.3

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

62.6

0.28

0.9

51.8

38.5

Minor 5ss

-2.3

3.1

41.6

Minor BPS

49.7

-0

1.7

57.31

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016576

Chromosome:

PEDO01001969.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020467

61 - 4231

4171