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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001973.1_2812_2936_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2812 - 2936
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATCAAGT
5'SS Class:
weak_major
3'SS Sequence:
ATCACAGCGTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTATTATTATCA
Flanking Amino Acid:
PMFDDGSDGRKWAKINHTKR
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
61.8
42.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
50.8
0.02
1
48.1
40
Minor 5ss
48.5
-0.1
2.7
66.4
38.9
Minor BPS
52.2
0.07
1.8
66.08
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016479
Chromosome:
PEDO01001973.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019270
2440 - 3075
636