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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001978.1_1864_2003_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1864 - 2003
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CCTTCTTTCACA
Flanking Amino Acid:
TQKVKVLTGTGNVNVTMLNY
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80.9
0.7
0.7
72.4
32.3
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
62.9
0.4
1.8
70.26
42.8

Associated Gene:

Gene:
MTG1
Ensembl Gene ID:
ENSAPLG00000014353
Chromosome:
PEDO01001978.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014962
96 - 2101
2006