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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002000.1_11289_13642_R

Intron Information:

Intron Rank:
155416
Intron Class:
major
Intron Phase:
Intron Coordinates:
11289 - 13642
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCACCTTTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
50
0.08
1.6
61.65
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031112
Chromosome:
PEDO01002000.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026101
10430 - 20453
10024