About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002000.1_11599_13642_R

Intron Information:

Intron Rank:
155419
Intron Class:
major
Intron Phase:
Intron Coordinates:
11599 - 13642
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATGAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.3
0.57
0.9
69.2
36.9
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
47.7
-0
2
71.81
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031112
Chromosome:
PEDO01002000.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033837
10430 - 13694
3265