Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002043.1_653_765_F

Intron Information:

Intron Rank:

147471

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

653 - 765

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTTGGGGGG

5'SS Class:

weak_major

3'SS Sequence:

CCTCCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

CGGGGCTGATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.1

0.12

1.3

42.4

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

0.74

0.7

80.1

25.2

Minor 5ss

23.1

-3.1

3.3

37.7

Minor BPS

39.1

-0.7

48.67

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029410

Chromosome:

PEDO01002043.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033880

248 - 1247

1000