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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002043.1_824_937_F

Intron Information:

Intron Rank:
147470
Intron Class:
major
Intron Phase:
Intron Coordinates:
824 - 937
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTGTC
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTGCCCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.1
39.6
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
36.7
-1.5
3.5
52.6
44.7
Minor BPS
50.5
0.09
1.9
69.53
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029410
Chromosome:
PEDO01002043.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021187
21 - 1247
1227