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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002050.1_701_1661_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
701 - 1661
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
GGGGTCCCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CGGTGCCAACCC
Flanking Amino Acid:
WWHRDVTGDTGRTARMEAHG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.1
37.1
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
59.5
0.21
1
51
39.3
Minor 5ss
24.5
-2.9
3.3
30.5
42.8
Minor BPS
35.8
-1.1
2.3
42.9
44.4

Associated Gene:

Gene:
LRRC61
Ensembl Gene ID:
ENSAPLG00000025765
Chromosome:
PEDO01002050.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031300
21 - 1893
1873