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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002085.1_1923_2187_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1923 - 2187
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TAATGCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GTCTATTTGACT
Flanking Amino Acid:
ENAENVPVKPHFPDVPSKSH
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
85.6
31.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
75.8
0.58
1
66.1
44.7
Minor 5ss
39.1
-1.2
3.4
59
45.5
Minor BPS
63.1
0.49
1.5
76.69
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003004
Chromosome:
PEDO01002085.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003039
899 - 2543
1645