Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002087.1_1263_1592_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1263 - 1592

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGCGTGCG

5'SS Class:

major

3'SS Sequence:

AGTCTCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTATAC

U12 Branch Point Sequence:

CCCGCCCGACCC

Flanking Amino Acid:

ELQDSYGQQWTFEQRRYQQY

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

56.9

42.5

Major BPS

47.8

-0.1

1.1

44.3

36.8

Major PPT

69.9

0.45

0.9

62.8

33.8

Minor 5ss

-2.8

3.1

23.5

37.1

Minor BPS

39.2

-0.8

42.97

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024166

Chromosome:

PEDO01002087.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021851

72 - 2084

2013