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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002087.1_1727_1815_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1727 - 1815
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCCTACG
5'SS Class:
weak_major
3'SS Sequence:
CGTGTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CGTTTTACACCC
Flanking Amino Acid:
RLSLLQQGLFRNHILVIAIV
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.2
53.8
44.9
Major BPS
72.8
0.57
1
81
30.3
Major PPT
63.9
0.31
1
58.4
38.4
Minor 5ss
35.6
-1.6
2.9
43.4
43.8
Minor BPS
41.7
-0.6
1.9
51.34
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024166
Chromosome:
PEDO01002087.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021851
72 - 2084
2013