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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002087.1_562_650_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
562 - 650
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACGC
5'SS Class:
major
3'SS Sequence:
CTCCCCTGCGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CCCCGCTGACCC
Flanking Amino Acid:
FASIVTGVEQGRLIFDNLKK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
56.8
42.6
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
57.6
0.17
1
58.7
30.3
Minor 5ss
25.5
-2.8
3.1
33
42.1
Minor BPS
40.4
-0.7
2
43.78
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024166
Chromosome:
PEDO01002087.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021851
72 - 2084
2013