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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_1368_1490_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1368 - 1490
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCACCCCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTCTGCTCACCC
Flanking Amino Acid:
PEVWLSWRYQIPALADAGFR
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
63.7
0.31
0.8
54.9
30.5
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
48.3
-0.1
2.2
66.26
45.6

Associated Gene:

Gene:
EPHX2
Ensembl Gene ID:
ENSAPLG00000012184
Chromosome:
PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033491
482 - 4242
3761
ENSAPLT00000020425
21 - 4246
4226
ENSAPLT00000012678
26 - 4242
4217
ENSAPLT00000046177
21 - 4246
4226
ENSAPLT00000040895
144 - 4242
4099