Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_1892_2783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1892 - 2783

Intron Length:

892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCGC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCACCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

TGTCCCCCACCT

Flanking Amino Acid:

EEYSQEQICKGIPQAVFIGH

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

63.9

42.4

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

70.3

0.46

0.8

65.6

29.1

Minor 5ss

25.7

-2.8

3.1

32.8

42.2

Minor BPS

46.9

-0.1

2.1

71.84

44.2

Associated Gene:

Gene:

EPHX2

Ensembl Gene ID:

ENSAPLG00000012184

Chromosome:

PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012678

26 - 4242

4217