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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_3114_3351_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3114 - 3351
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAGCAC
U12 Branch Point Sequence:
GCCCCCCAAGCA
Flanking Amino Acid:
FDYQFYFQEPGVAEAELEKD
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.1
38.7
Major BPS
43.4
-0.4
1.3
47.1
36.1
Major PPT
79.4
0.66
0.7
73.8
24.3
Minor 5ss
27.9
-2.5
2.8
32.3
42
Minor BPS
40
-0.7
2
46.12
43

Associated Gene:

Gene:
EPHX2
Ensembl Gene ID:
ENSAPLG00000012184
Chromosome:
PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033491
482 - 4242
3761
ENSAPLT00000020425
21 - 4246
4226
ENSAPLT00000046177
21 - 4246
4226
ENSAPLT00000012678
26 - 4242
4217
ENSAPLT00000040895
144 - 4242
4099
ENSAPLT00000035205
144 - 4242
4099