Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_3822_3901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3822 - 3901

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCCAT

U12 Branch Point Sequence:

GTCGCATCCATC

Flanking Amino Acid:

APRFLGIQERGGLLVGFPEN

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

73.2

34.8

Major BPS

57.2

0.18

1.3

68.1

Major PPT

74.6

0.55

0.9

68.9

37.1

Minor 5ss

30.5

-2.2

3.8

47.1

48.5

Minor BPS

39.9

-0.8

2.1

48.08

Associated Gene:

Gene:

EPHX2

Ensembl Gene ID:

ENSAPLG00000012184

Chromosome:

PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020425

21 - 4246

4226

ENSAPLT00000046177

21 - 4246

4226