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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002096.1_417_657_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
417 - 657
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
GGTTTTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAA
U12 Branch Point Sequence:
GTGCCCCCAACA
Flanking Amino Acid:
LEVLQAKPQDVILLDDIGEN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
45.3
-0.2
1.2
50
35.2
Major PPT
71.2
0.48
1
62.5
44.3
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
49.2
-0
1.9
63.31
42.2

Associated Gene:

Gene:
EPHX2
Ensembl Gene ID:
ENSAPLG00000012184
Chromosome:
PEDO01002096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040895
144 - 4242
4099
ENSAPLT00000035205
144 - 4242
4099
ENSAPLT00000020425
21 - 4246
4226
ENSAPLT00000012678
26 - 4242
4217
ENSAPLT00000046177
21 - 4246
4226